FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index18_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 18771891 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4104380 | 2.612782 | 5.312778 | 1 |
| CCTGG | 4095505 | 2.5935762 | 5.869422 | 1 |
| GAAGA | 3949815 | 2.5466053 | 5.123042 | 2 |
| CTTCT | 4074665 | 2.541787 | 6.048033 | 1 |
| AAGAA | 3933470 | 2.5301867 | 5.172317 | 2 |
| CTGGA | 3857565 | 2.4584959 | 9.119066 | 1 |
| TCCAG | 3750350 | 2.3694916 | 5.6820755 | 2 |
| CTGCT | 3726715 | 2.3423162 | 5.2777133 | 1 |
| CTCCT | 3724120 | 2.3204393 | 7.6647077 | 1 |
| CTGGG | 3521770 | 2.2497041 | 8.544563 | 1 |
| CAGGA | 3502620 | 2.2439504 | 5.4494057 | 1 |
| CTTCA | 3529320 | 2.2131062 | 6.1415243 | 1 |
| CTCCA | 3471795 | 2.1745265 | 8.030817 | 1 |
| CCCAG | 3399505 | 2.1453516 | 7.059781 | 1 |
| CAGAA | 3236155 | 2.0684326 | 5.12801 | 1 |
| CTCTG | 3190325 | 2.0051844 | 6.7513895 | 1 |
| CTTCC | 3144370 | 1.9592065 | 5.0352507 | 1 |
| CTGGC | 2996520 | 1.8976178 | 5.558049 | 1 |
| TGGAA | 2900410 | 1.8602883 | 5.2641606 | 2 |
| CTGAA | 2900405 | 1.8441943 | 5.8822484 | 1 |
| CTTTT | 2888730 | 1.8040757 | 5.4322567 | 1 |
| CTCAG | 2734255 | 1.7275172 | 6.5332003 | 1 |
| CTGAG | 2706160 | 1.7246846 | 5.1629114 | 1 |
| CTTTG | 2713425 | 1.70741 | 5.41477 | 1 |
| CTGGT | 2657885 | 1.6851103 | 5.278955 | 1 |
| CTTGG | 2578165 | 1.6345676 | 5.6789346 | 1 |